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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14820-RA through 18771 annotations produced 1 hits



(CG14820):

Annotation Number : CG14820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035718
Gbrowse : chr3L:6926029-6927939 (+) // 100.0 //
Probeset : 1625552_at
Accessions : protein= NP_648060;, nucleotide= NM_139803;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0035718.
BioGrid reports that CG14820 interacts with CG17109 CG3348 CG1504 CG17196 CG1850 CG2765 CG2985 CG3394 CG3762 CG5392 CG6016 CG7033 CG8893 CG9985 .
VDRC has 2 RNAi stocks for FBgn0035718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland12 ± 00 of 4 0.11Down
Crop3 ± 00 of 4 0.00Down
Midgut1067 ± 614 of 410.00Up
Tubule6 ± 30 of 4 0.10Down
Hindgut47 ± 54 of 4 0.40Down
Heart3 ± 00 of 4 0.03Down
Fat body6 ± 40 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 13 of 4 0.10Down
Male accessory glands7 ± 31 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS6 ± 23 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut1320 ± 1764 of 412.37Up
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea4 ± 12 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly106 ± 84 of 4

Looking for CG14820-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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