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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14826-RA through 18771 annotations produced 1 hits


Annotation Number : CG14826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035750
Gbrowse : chr3L:7227883-7228672 (+) // 100.0 //
Probeset : 1636283_at
Accessions : protein= NP_001097528; /// NP_648088;, nucleotide= NM_001104058; /// NM_139831;
FlyMine data for FBgn0035750.
VDRC has 1 RNAi stocks for FBgn0035750 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head1 00 of 4 0.60None
Eye0 00 of 4 0.23None
Thoracicoabdominal ganglion2 00 of 4 1.10None
Salivary gland6 20 of 4 3.01None
Crop5 20 of 4 2.30None
Midgut1 00 of 4 0.60None
Tubule1 00 of 4 0.80Down
Hindgut4 10 of 4 2.00None
Heart1 00 of 4 0.56None
Fat body3 20 of 4 1.33None
Ovary1 00 of 4 0.70None
Testis24 24 of 410.80Up
Male accessory glands3 10 of 4 1.60None
Virgin spermatheca3 10 of 4 1.35None
Mated spermatheca4 10 of 4 2.01None
Adult carcass3 10 of 4 1.30None
Larval CNS4 10 of 4 1.86None
Larval Salivary gland2 00 of 4 1.19None
Larval midgut1 00 of 4 0.82None
Larval tubule0 00 of 4 0.40None
Larval hindgut217 284 of 495.77Up
Larval fat body5 10 of 4 2.50None
Larval trachea1 10 of 4 0.80None
Larval carcass3 10 of 4 1.69None
S2 cells (growing)0 00 of 4 0.40None
Whole fly2 10 of 4

Looking for CG14826-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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