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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14839-RA through 18771 annotations produced 1 hits


(CG14839):

Annotation Number : CG14839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038219
Gbrowse : chr3R:10088108-10089094 (+) // 100.0 //
Probeset : 1637960_at
Accessions : protein= NP_650351;, nucleotide= NM_142094;
FlyMine data for FBgn0038219.
VDRC has 2 RNAi stocks for FBgn0038219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.34None
Crop0 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule0 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.05Down
Fat body0 ± 00 of 4 0.08Down
Ovary0 ± 00 of 4 0.10Down
Testis210 ± 114 of 425.00Up
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.09Down
Mated spermatheca0 ± 00 of 4 0.07Down
Adult carcass0 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut0 ± 00 of 4 0.08Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.09Down
Larval fat body32 ± 151 of 4 3.80None
Larval trachea1 ± 00 of 4 0.16Down
Larval carcass0 ± 00 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.06Down
Whole fly8 ± 20 of 4

Looking for CG14839-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime