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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14840-RA through 18771 annotations produced 1 hits


(CG14840):

Annotation Number : CG14840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038217
Gbrowse : chr3R:10085929-10086935 (-) // 100.0 //
Probeset : 1627439_at
Accessions : protein= NP_650349;, nucleotide= NM_142092;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038217.
BioGrid reports that CG14840 interacts with CG17666 CG17769 CG3891 CG6459 CG8204 Dmel CG17162 .
VDRC has 3 RNAi stocks for FBgn0038217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.25Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.23Down
Fat body1 ± 00 of 4 0.11Down
Ovary0 ± 00 of 4 0.00Down
Testis299 ± 184 of 420.30Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.07Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut1 ± 00 of 4 0.11Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.11Down
Larval fat body38 ± 231 of 4 2.60None
Larval trachea5 ± 40 of 4 0.38Down
Larval carcass1 ± 00 of 4 0.11Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly14 ± 11 of 4

Looking for CG14840-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime