FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1487-RA through 18771 annotations produced 1 hits

kurtz (krz):

Annotation Number : CG1487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040206
Gbrowse : chr3R:27873826-27877711 (-) // 100.0 //
Probeset : 1623793_at
Accessions : protein= NP_524988;, nucleotide= NM_080249;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040206.
BDGP gene expression has embryonic in situ data for krz: 4 pix of staining in 1 body parts.
Homophila reports that CG1487 is a close match (5e-74) to human gene SAG (NP_000532), a gene associated with Oguchi disease-1, 258100 (3).
BioGrid reports that CG1487 interacts with CG15172 CG31247 CG32626 CG5877 CG6254 CG14931 CG32100 CG32354 CG32491 CG3810 CG3929 CG3995 CG4461 CG9091 CG15319 .
TRiP has 2 RNAi stocks for FBgn0040206 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040206 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	46 ± 3	4 of 4	1.70	Up
Head	31 ± 6	4 of 4	1.20	None
Eye	7 ± 2	2 of 4	0.27	Down
Thoracicoabdominal ganglion	20 ± 1	4 of 4	0.80	None
Salivary gland	31 ± 4	4 of 4	1.17	None
Crop	171 ± 12	4 of 4	6.30	Up
Midgut	25 ± 0	4 of 4	0.90	None
Tubule	14 ± 1	3 of 4	0.50	Down
Hindgut	42 ± 3	4 of 4	1.60	Up
Heart	31 ± 4	4 of 4	1.17	None
Fat body	83 ± 19	4 of 4	3.05	Up
Ovary	21 ± 1	4 of 4	0.80	None
Testis	7 ± 1	3 of 4	0.30	Down
Male accessory glands	22 ± 1	4 of 4	0.80	None
Virgin spermatheca	15 ± 0	4 of 4	0.57	Down
Mated spermatheca	16 ± 1	4 of 4	0.60	Down
Adult carcass	45 ± 2	4 of 4	1.70	Up
Larval CNS	54 ± 8	4 of 4	1.99	Up
Larval Salivary gland	64 ± 1	4 of 4	2.38	Up
Larval midgut	21 ± 0	4 of 4	0.77	None
Larval tubule	33 ± 3	4 of 4	1.20	None
Larval hindgut	47 ± 3	4 of 4	1.75	Up
Larval fat body	17 ± 2	4 of 4	0.60	Down
Larval trachea	25 ± 4	4 of 4	0.95	None
Larval carcass	36 ± 1	4 of 4	1.33	Up
S2 cells (growing)	112 ± 8	4 of 4	4.12	Up
Whole fly	27 ± 2	4 of 4

Looking for CG1487-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720