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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14877-RA through 18771 annotations produced 1 hits



(CG14877):

Annotation Number : CG14877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038380
Gbrowse : chr3R:11714915-11715837 (-) // 100.0 //
Probeset : 1627045_at
Accessions : protein= NP_650507;, nucleotide= NM_142250;
Interpro : 0004383 // guanylate cyclase activity // inferred from sequence or structural similarity /// 0004383 // guanylate cyclas
FlyMine data for FBgn0038380.
VDRC has 3 RNAi stocks for FBgn0038380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.70None
Head4 ± 21 of 4 1.10None
Eye3 ± 00 of 4 0.82None
Thoracicoabdominal ganglion7 ± 20 of 4 1.70None
Salivary gland16 ± 20 of 4 3.70Up
Crop6 ± 20 of 4 1.40None
Midgut13 ± 30 of 4 3.00None
Tubule5 ± 00 of 4 1.30Up
Hindgut5 ± 20 of 4 1.20None
Heart2 ± 10 of 4 0.61None
Fat body3 ± 40 of 4 0.88None
Ovary5 ± 00 of 4 1.10None
Testis4 ± 10 of 4 1.00None
Male accessory glands9 ± 30 of 4 2.20None
Virgin spermatheca2 ± 10 of 4 0.67None
Mated spermatheca2 ± 00 of 4 0.54None
Adult carcass8 ± 30 of 4 1.90None
Larval CNS3 ± 10 of 4 0.70None
Larval Salivary gland13 ± 10 of 4 2.98Up
Larval midgut8 ± 30 of 4 1.98None
Larval tubule5 ± 20 of 4 1.30None
Larval hindgut5 ± 10 of 4 1.13None
Larval fat body8 ± 20 of 4 2.00None
Larval trachea3 ± 30 of 4 0.73None
Larval carcass4 ± 00 of 4 0.92None
S2 cells (growing)2 ± 10 of 4 0.68None
Whole fly4 ± 10 of 4

Looking for CG14877-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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