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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1488-RA through 18771 annotations produced 1 hits



Cyp311a1 (Cyp311a1):

Annotation Number : CG1488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030367
Gbrowse : chrX:11923316-11925498 (-) // 100.0 //
Probeset : 1630505_a_at
Accessions : protein= NP_572780; /// NP_727589;, nucleotide= NM_132552; /// NM_167317;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0030367.
BDGP gene expression has embryonic in situ data for Cyp311a1: 4 pix of staining in 1 body parts.
Homophila reports that CG1488 is a close match (2e-11) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).
VDRC has 3 RNAi stocks for FBgn0030367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head10 14 of 4 2.10Up
Eye26 14 of 4 5.38Up
Thoracicoabdominal ganglion2 10 of 4 0.60None
Salivary gland5 20 of 4 1.18None
Crop8 12 of 4 1.70None
Midgut11 04 of 4 2.20Up
Tubule2 00 of 4 0.50Down
Hindgut3 00 of 4 0.70None
Heart6 12 of 4 1.26None
Fat body2 00 of 4 0.57None
Ovary3 00 of 4 0.70None
Testis1 00 of 4 0.40None
Male accessory glands10 12 of 4 2.10Up
Virgin spermatheca2 10 of 4 0.45None
Mated spermatheca3 11 of 4 0.64None
Adult carcass13 33 of 4 2.60None
Larval CNS0 00 of 4 0.15Down
Larval Salivary gland3 00 of 4 0.70None
Larval midgut32 54 of 4 6.48Up
Larval tubule2 00 of 4 0.40None
Larval hindgut1 10 of 4 0.32None
Larval fat body4 20 of 4 1.00None
Larval trachea2 21 of 4 0.40None
Larval carcass1 00 of 4 0.27Down
S2 cells (growing)0 00 of 4 0.13Down
Whole fly5 12 of 4

Looking for CG1488-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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