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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14889-RA through 18771 annotations produced 1 hits



CG11769 (CG42342):

Annotation Number : CG14889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259244
Gbrowse : chr3R:12381876-12394335 (+) // 100.0 //
Probeset : 1631471_at
Accessions : protein= NP_001138061; /// NP_001138062; /// NP_001138063; /// NP_001138064; /// NP_001163631;, nucleotide= NM_001144589; /// NM_001144590; /// NM_001144591; /// NM_001144592; /// NM_001170160;
Pathway : encompassing mutualism through parasitism // inferred from direct assay"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0259244.
TRiP has 1 RNAi stocks for FBgn0259244 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259244 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain374 ± 114 of 428.20Up
Head81 ± 94 of 4 6.20Up
Eye25 ± 14 of 4 1.89Up
Thoracicoabdominal ganglion436 ± 84 of 432.80Up
Salivary gland14 ± 22 of 4 1.07None
Crop4 ± 11 of 4 0.30Down
Midgut4 ± 00 of 4 0.30Down
Tubule2 ± 00 of 4 0.20Down
Hindgut3 ± 00 of 4 0.20Down
Heart2 ± 00 of 4 0.20Down
Fat body5 ± 03 of 4 0.39Down
Ovary1 ± 00 of 4 0.10Down
Testis4 ± 13 of 4 0.30Down
Male accessory glands6 ± 30 of 4 0.50None
Virgin spermatheca2 ± 00 of 4 0.19Down
Mated spermatheca2 ± 00 of 4 0.18Down
Adult carcass6 ± 00 of 4 0.50Down
Larval CNS492 ± 284 of 436.99Up
Larval Salivary gland5 ± 00 of 4 0.39Down
Larval midgut5 ± 02 of 4 0.39Down
Larval tubule4 ± 12 of 4 0.30Down
Larval hindgut4 ± 02 of 4 0.35Down
Larval fat body7 ± 23 of 4 0.50None
Larval trachea2 ± 00 of 4 0.22Down
Larval carcass6 ± 02 of 4 0.50Down
S2 cells (growing)1 ± 01 of 4 0.15Down
Whole fly13 ± 14 of 4

Looking for CG14889-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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