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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14892-RA through 18771 annotations produced 1 hits



(CG14892):

Annotation Number : CG14892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038447
Gbrowse : chr3R:12420819-12422776 (+) // 100.0 //
Probeset : 1634119_at
Accessions : protein= NP_650562;, nucleotide= NM_142305;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038447.
Homophila reports that CG14892 is a close match (3e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
TRiP has 1 RNAi stocks for FBgn0038447 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30Down
Head6 ± 20 of 4 1.00None
Eye7 ± 10 of 4 1.19None
Thoracicoabdominal ganglion7 ± 30 of 4 1.30None
Salivary gland4 ± 10 of 4 0.66None
Crop4 ± 20 of 4 0.70None
Midgut7 ± 30 of 4 1.20None
Tubule5 ± 10 of 4 0.80None
Hindgut4 ± 10 of 4 0.70None
Heart2 ± 10 of 4 0.42None
Fat body1 ± 00 of 4 0.30Down
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 10 of 4 0.70None
Male accessory glands2 ± 00 of 4 0.40Down
Virgin spermatheca1 ± 00 of 4 0.20Down
Mated spermatheca8 ± 10 of 4 1.34None
Adult carcass4 ± 10 of 4 0.80None
Larval CNS1 ± 10 of 4 0.30Down
Larval Salivary gland2 ± 00 of 4 0.41Down
Larval midgut18 ± 10 of 4 2.93Up
Larval tubule6 ± 10 of 4 1.00None
Larval hindgut4 ± 00 of 4 0.68None
Larval fat body2 ± 10 of 4 0.40None
Larval trachea1 ± 10 of 4 0.24Down
Larval carcass9 ± 10 of 4 1.47None
S2 cells (growing)4 ± 10 of 4 0.71None
Whole fly6 ± 10 of 4

Looking for CG14892-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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