FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14894-RA through 18771 annotations produced 1 hits

(CG14894):

Annotation Number : CG14894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038428
Gbrowse : chr3R:12267793-12268729 (-) // 100.0 //
Probeset : 1624614_at
Accessions : protein= NP_650543;, nucleotide= NM_142286;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0038428.
BioGrid reports that CG14894 interacts with CG5703 CG2655 CG4313 .
TRiP has 1 RNAi stocks for FBgn0038428 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038428 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	128 ± 1	4 of 4	0.80	None
Head	96 ± 6	4 of 4	0.60	Down
Eye	125 ± 3	4 of 4	0.80	None
Thoracicoabdominal ganglion	96 ± 4	4 of 4	0.60	Down
Salivary gland	49 ± 11	3 of 4	0.31	Down
Crop	99 ± 4	4 of 4	0.60	Down
Midgut	108 ± 4	4 of 4	0.70	Down
Tubule	117 ± 7	4 of 4	0.80	Down
Hindgut	94 ± 4	4 of 4	0.60	Down
Heart	190 ± 10	4 of 4	1.22	None
Fat body	153 ± 6	4 of 4	0.98	None
Ovary	243 ± 4	4 of 4	1.60	Up
Testis	366 ± 26	4 of 4	2.30	Up
Male accessory glands	87 ± 2	4 of 4	0.60	Down
Virgin spermatheca	62 ± 4	4 of 4	0.40	Down
Mated spermatheca	56 ± 2	4 of 4	0.36	Down
Adult carcass	102 ± 5	4 of 4	0.70	Down
Larval CNS	165 ± 8	4 of 4	1.06	None
Larval Salivary gland	191 ± 9	4 of 4	1.23	Up
Larval midgut	129 ± 8	4 of 4	0.83	None
Larval tubule	212 ± 7	4 of 4	1.40	Up
Larval hindgut	117 ± 4	4 of 4	0.75	Down
Larval fat body	188 ± 11	4 of 4	1.20	None
Larval trachea	163 ± 13	4 of 4	1.05	None
Larval carcass	119 ± 3	4 of 4	0.77	Down
S2 cells (growing)	218 ± 5	4 of 4	1.40	Up
Whole fly	156 ± 10	4 of 4

Looking for CG14894-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720