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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14899-RA through 18771 annotations produced 1 hits

Derlin-2 (Der-2):

Annotation Number : CG14899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038438
Gbrowse : chr3R:12308415-12310125 (-) // 100.0 //
Probeset : 1623458_at
Accessions : protein= NP_650553;, nucleotide= NM_142296;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038438.
BDGP gene expression has embryonic in situ data for CG14899: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038438 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 14 of 4 1.00None
Head199 114 of 4 1.00None
Eye296 74 of 4 1.43Up
Thoracicoabdominal ganglion171 44 of 4 0.80None
Salivary gland828 444 of 4 4.01Up
Crop251 34 of 4 1.20None
Midgut442 64 of 4 2.10Up
Tubule281 184 of 4 1.40Up
Hindgut243 54 of 4 1.20None
Heart345 74 of 4 1.67Up
Fat body327 284 of 4 1.59Up
Ovary276 24 of 4 1.30Up
Testis298 84 of 4 1.40Up
Male accessory glands597 424 of 4 2.90Up
Virgin spermatheca261 84 of 4 1.26Up
Mated spermatheca251 124 of 4 1.21None
Adult carcass209 134 of 4 1.00None
Larval CNS137 84 of 4 0.66Down
Larval Salivary gland700 394 of 4 3.39Up
Larval midgut384 64 of 4 1.86Up
Larval tubule248 24 of 4 1.20None
Larval hindgut236 114 of 4 1.14None
Larval fat body362 64 of 4 1.80Up
Larval trachea291 164 of 4 1.41Up
Larval carcass214 84 of 4 1.04None
S2 cells (growing)541 164 of 4 2.62Up
Whole fly206 154 of 4

Looking for CG14899-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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