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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14900-RA through 18771 annotations produced 1 hits



Cad89D (Cad89D):

Annotation Number : CG14900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038439
Gbrowse : chr3R:12310420-12321141 (-) // 100.0 //
Probeset : 1629863_at
Accessions : protein= NP_650554;, nucleotide= NM_142297;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0038439.
Homophila reports that CG14900 is a close match (9e-11) to human gene DSG4;LAH (NP_817123), a gene associated with Hypotrichosis, localized, autosomal recessive, 607903 (3).
TRiP has 1 RNAi stocks for FBgn0038439 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 0.50None
Head8 ± 11 of 4 0.70None
Eye25 ± 24 of 4 2.08Up
Thoracicoabdominal ganglion8 ± 04 of 4 0.70None
Salivary gland17 ± 12 of 4 1.45None
Crop7 ± 12 of 4 0.60None
Midgut11 ± 02 of 4 0.90None
Tubule8 ± 11 of 4 0.70Down
Hindgut10 ± 04 of 4 0.90None
Heart6 ± 00 of 4 0.51Down
Fat body10 ± 31 of 4 0.81None
Ovary6 ± 03 of 4 0.50Down
Testis7 ± 12 of 4 0.60None
Male accessory glands11 ± 20 of 4 0.90None
Virgin spermatheca12 ± 13 of 4 1.00None
Mated spermatheca10 ± 12 of 4 0.80None
Adult carcass16 ± 43 of 4 1.30None
Larval CNS6 ± 03 of 4 0.51Down
Larval Salivary gland11 ± 23 of 4 0.96None
Larval midgut14 ± 13 of 4 1.20None
Larval tubule5 ± 00 of 4 0.40Down
Larval hindgut8 ± 14 of 4 0.71None
Larval fat body9 ± 11 of 4 0.80None
Larval trachea10 ± 23 of 4 0.82None
Larval carcass10 ± 03 of 4 0.82None
S2 cells (growing)8 ± 22 of 4 0.65None
Whole fly12 ± 13 of 4

Looking for CG14900-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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