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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1492-RA through 18771 annotations produced 1 hits



(CG1492):

Annotation Number : CG1492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030361
Gbrowse : chrX:11903741-11906242 (-) // 100.0 //
Probeset : 1631880_at
Accessions : protein= NP_572774;, nucleotide= NM_132546;
Interpro : 0003840 // gamma-glutamyltransferase activity // inferred from sequence or structural similarity /// 0003840 // gamma-gl
FlyMine data for FBgn0030361.
BDGP gene expression has embryonic in situ data for CG1492: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 54 of 4 7.40Up
Head57 ± 14 of 4 2.20Up
Eye26 ± 24 of 4 1.02None
Thoracicoabdominal ganglion278 ± 34 of 410.70Up
Salivary gland6 ± 10 of 4 0.25Down
Crop7 ± 21 of 4 0.30Down
Midgut4 ± 10 of 4 0.20Down
Tubule7 ± 00 of 4 0.30Down
Hindgut8 ± 12 of 4 0.30Down
Heart7 ± 11 of 4 0.29Down
Fat body9 ± 31 of 4 0.35Down
Ovary58 ± 14 of 4 2.20Up
Testis4 ± 21 of 4 0.20Down
Male accessory glands14 ± 10 of 4 0.60Down
Virgin spermatheca4 ± 11 of 4 0.18Down
Mated spermatheca4 ± 10 of 4 0.17Down
Adult carcass12 ± 31 of 4 0.50Down
Larval CNS73 ± 54 of 4 2.82Up
Larval Salivary gland8 ± 21 of 4 0.33Down
Larval midgut10 ± 10 of 4 0.39Down
Larval tubule10 ± 12 of 4 0.40Down
Larval hindgut8 ± 11 of 4 0.32Down
Larval fat body6 ± 22 of 4 0.20Down
Larval trachea10 ± 14 of 4 0.39Down
Larval carcass6 ± 00 of 4 0.27Down
S2 cells (growing)21 ± 04 of 4 0.84None
Whole fly26 ± 24 of 4

Looking for CG1492-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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