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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14934-RA through 18771 annotations produced 1 hits



(CG14934):

Annotation Number : CG14934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032381
Gbrowse : chr2L:11847230-11849115 (+) // 100.0 //
Probeset : 1638508_at
Accessions : protein= NP_609522;, nucleotide= NM_135678;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // infer
FlyMine data for FBgn0032381.
Homophila reports that CG14934 is a close match (6e-97) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
VDRC has 3 RNAi stocks for FBgn0032381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head57 ± 43 of 4 0.80None
Eye6 ± 20 of 4 0.09Down
Thoracicoabdominal ganglion12 ± 40 of 4 0.20None
Salivary gland10532 ± 11544 of 4146.28Up
Crop540 ± 1874 of 4 7.50None
Midgut24 ± 20 of 4 0.30None
Tubule24 ± 50 of 4 0.30Down
Hindgut29 ± 10 of 4 0.40None
Heart7 ± 11 of 4 0.10Down
Fat body13 ± 40 of 4 0.18None
Ovary3 ± 10 of 4 0.00Down
Testis27 ± 14 of 4 0.40None
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca18 ± 20 of 4 0.25None
Mated spermatheca11 ± 10 of 4 0.16None
Adult carcass134 ± 104 of 4 1.90Up
Larval CNS4 ± 10 of 4 0.06Down
Larval Salivary gland6 ± 10 of 4 0.09Down
Larval midgut15 ± 00 of 4 0.21None
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut12 ± 10 of 4 0.17None
Larval fat body10 ± 40 of 4 0.10None
Larval trachea5 ± 10 of 4 0.07Down
Larval carcass26 ± 31 of 4 0.36None
S2 cells (growing)21 ± 10 of 4 0.29None
Whole fly72 ± 204 of 4

Looking for CG14934-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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