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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14936-RA through 18771 annotations produced 1 hits


Tetraspanin 33B (Tsp33B):

Annotation Number : CG14936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032376
Gbrowse : chr2L:11791024-11792365 (-) // 100.0 //
Probeset : 1630087_at
Accessions : protein= NP_523552;, nucleotide= NM_078828;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032376.
BioGrid reports that CG14936 interacts with CG4591 .
TRiP has 1 RNAi stocks for FBgn0032376 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye5 ± 20 of 4 0.16Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.27Down
Crop4 ± 10 of 4 0.10Down
Midgut6 ± 20 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 00 of 4 0.10Down
Heart4 ± 10 of 4 0.11Down
Fat body5 ± 30 of 4 0.16Down
Ovary0 ± 00 of 4 0.00Down
Testis572 ± 54 of 415.60Up
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.14Down
Mated spermatheca6 ± 20 of 4 0.19Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.08Down
Larval midgut5 ± 10 of 4 0.14Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body140 ± 614 of 4 3.80None
Larval trachea1 ± 10 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly36 ± 14 of 4

Looking for CG14936-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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