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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1494-RA through 18771 annotations produced 1 hits



(CG1494):

Annotation Number : CG1494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031169
Gbrowse : chrX:21156383-21163160 (+) // 100.0 //
Probeset : 1631731_at
Accessions : protein= NP_608444;, nucleotide= NM_134600;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031169.
Homophila reports that CG1494 is a close match (1e-42) to human gene ABCA4;ABCR;ARMD2;CORD3;FFM;RP19;STGD1 (NP_000341), a gene associated with Cone-rod dystrophy 3, 604116 (3);Fundus flavimaculatus, 248200 (3);Macular degeneration, age-related, 2, 153800 (3);Retinal dystrophy, early-onset severe, 248200 (3);Retinitis pigmentosa-19, 601718 (3);Stargardt disease-1, 248200 (3).
VDRC has 1 RNAi stocks for FBgn0031169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.50None
Head4 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.12Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.80None
Salivary gland16 ± 20 of 4 1.64None
Crop3 ± 10 of 4 0.30Down
Midgut2 ± 00 of 4 0.20Down
Tubule5 ± 10 of 4 0.50Down
Hindgut5 ± 20 of 4 0.50None
Heart1 ± 00 of 4 0.12Down
Fat body2 ± 10 of 4 0.21Down
Ovary3 ± 00 of 4 0.30Down
Testis68 ± 14 of 4 6.90Up
Male accessory glands5 ± 10 of 4 0.60None
Virgin spermatheca7 ± 20 of 4 0.80None
Mated spermatheca7 ± 11 of 4 0.76None
Adult carcass8 ± 10 of 4 0.90None
Larval CNS3 ± 10 of 4 0.36Down
Larval Salivary gland5 ± 20 of 4 0.58None
Larval midgut3 ± 10 of 4 0.39Down
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.42None
Larval fat body18 ± 81 of 4 1.90None
Larval trachea2 ± 10 of 4 0.24Down
Larval carcass2 ± 00 of 4 0.21Down
S2 cells (growing)4 ± 00 of 4 0.49None
Whole fly9 ± 21 of 4

Looking for CG1494-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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