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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14962-RA through 18771 annotations produced 1 hits



(CG14962):

Annotation Number : CG14962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035407
Gbrowse : chr3L:3163778-3166250 (-) // 100.0 //
Probeset : 1624062_at
Accessions : protein= NP_647776;, nucleotide= NM_139519;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0035407.
BioGrid reports that CG14962 interacts with CG6998 CG33113 .
TRiP has 2 RNAi stocks for FBgn0035407 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 0.90None
Head34 14 of 4 0.50Down
Eye48 14 of 4 0.67Down
Thoracicoabdominal ganglion51 44 of 4 0.70Down
Salivary gland58 64 of 4 0.80None
Crop33 24 of 4 0.50Down
Midgut24 14 of 4 0.30Down
Tubule20 03 of 4 0.30Down
Hindgut23 24 of 4 0.30Down
Heart19 14 of 4 0.26Down
Fat body16 34 of 4 0.23Down
Ovary160 44 of 4 2.20Up
Testis55 54 of 4 0.80Down
Male accessory glands55 24 of 4 0.80Down
Virgin spermatheca19 14 of 4 0.26Down
Mated spermatheca29 14 of 4 0.40Down
Adult carcass27 24 of 4 0.40Down
Larval CNS47 54 of 4 0.64Down
Larval Salivary gland76 84 of 4 1.05None
Larval midgut20 24 of 4 0.28Down
Larval tubule20 14 of 4 0.30Down
Larval hindgut26 34 of 4 0.36Down
Larval fat body20 43 of 4 0.30Down
Larval trachea51 44 of 4 0.71Down
Larval carcass24 14 of 4 0.34Down
S2 cells (growing)35 04 of 4 0.49Down
Whole fly73 34 of 4

Looking for CG14962-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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