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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14963-RA through 18771 annotations produced 1 hits



(CG14963):

Annotation Number : CG14963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035409
Gbrowse : chr3L:3171755-3172541 (-) // 100.0 //
Probeset : 1638974_at
Accessions : protein= NP_647778;, nucleotide= NM_139521;
FlyMine data for FBgn0035409.
BDGP gene expression has embryonic in situ data for CG14963: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0035409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.00Down
Head7 22 of 4 0.10Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland13 22 of 4 0.14Down
Crop10 03 of 4 0.10Down
Midgut10 20 of 4 0.10Down
Tubule2906 16693 of 428.60None
Hindgut5 20 of 4 0.10Down
Heart2 00 of 4 0.02Down
Fat body67 1191 of 4 0.67None
Ovary2 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands7 31 of 4 0.10Down
Virgin spermatheca3 00 of 4 0.04Down
Mated spermatheca5 12 of 4 0.05Down
Adult carcass28 34 of 4 0.30Down
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut9 20 of 4 0.09Down
Larval tubule6041 874 of 459.40Up
Larval hindgut3 00 of 4 0.04Down
Larval fat body50 263 of 4 0.50None
Larval trachea12 221 of 4 0.13Down
Larval carcass9 13 of 4 0.09Down
S2 cells (growing)4 10 of 4 0.04Down
Whole fly101 214 of 4

Looking for CG14963-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime