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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14981-RB through 18771 annotations produced 1 hits



maggie (mge):

Annotation Number : CG14981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035473
Gbrowse : chr3L:3907856-3909931 (-) // 100.0 //
Probeset : 1623326_a_at
Accessions : protein= NP_523910; /// NP_728910;, nucleotide= NM_079186; /// NM_168044;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred from elec
Interpro : 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from sequence or structural
FlyMine data for FBgn0035473.
BDGP gene expression has embryonic in situ data for mge: 10 pix of staining in 8 body parts.
BioGrid reports that CG14981 interacts with CG5422 .
VDRC has 1 RNAi stocks for FBgn0035473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1022 ± 134 of 4 1.00None
Head710 ± 134 of 4 0.70Down
Eye847 ± 424 of 4 0.86None
Thoracicoabdominal ganglion1264 ± 324 of 4 1.30Up
Salivary gland398 ± 234 of 4 0.40Down
Crop709 ± 294 of 4 0.70Down
Midgut632 ± 194 of 4 0.60Down
Tubule627 ± 204 of 4 0.60Down
Hindgut638 ± 34 of 4 0.60Down
Heart692 ± 154 of 4 0.70Down
Fat body985 ± 854 of 4 1.00None
Ovary1056 ± 114 of 4 1.10None
Testis2410 ± 814 of 4 2.40Up
Male accessory glands804 ± 484 of 4 0.80Down
Virgin spermatheca515 ± 234 of 4 0.52Down
Mated spermatheca663 ± 244 of 4 0.67Down
Adult carcass586 ± 154 of 4 0.60Down
Larval CNS888 ± 194 of 4 0.90None
Larval Salivary gland604 ± 174 of 4 0.61Down
Larval midgut487 ± 724 of 4 0.50Down
Larval tubule174 ± 64 of 4 0.20Down
Larval hindgut636 ± 584 of 4 0.65Down
Larval fat body602 ± 1734 of 4 0.60None
Larval trachea636 ± 654 of 4 0.65Down
Larval carcass526 ± 794 of 4 0.53Down
S2 cells (growing)521 ± 74 of 4 0.53Down
Whole fly984 ± 484 of 4

Looking for CG14981-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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