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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14984-RA through 18771 annotations produced 1 hits



(CG14984):

Annotation Number : CG14984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035480
Gbrowse : chr3L:3951351-3952821 (-) // 100.0 //
Probeset : 1639452_at
Accessions : protein= NP_647844;, nucleotide= NM_139587;
FlyMine data for FBgn0035480.
VDRC has 3 RNAi stocks for FBgn0035480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head229 ± 54 of 4 4.80Up
Eye43 ± 24 of 4 0.93None
Thoracicoabdominal ganglion6 ± 00 of 4 0.10Down
Salivary gland20 ± 10 of 4 0.42Down
Crop777 ± 314 of 416.40Up
Midgut18 ± 10 of 4 0.40Down
Tubule3 ± 00 of 4 0.10Down
Hindgut347 ± 84 of 4 7.30Up
Heart3 ± 10 of 4 0.07Down
Fat body6 ± 50 of 4 0.13Down
Ovary3 ± 00 of 4 0.10Down
Testis117 ± 54 of 4 2.50Up
Male accessory glands15 ± 40 of 4 0.30Down
Virgin spermatheca21 ± 40 of 4 0.46Down
Mated spermatheca28 ± 51 of 4 0.60Down
Adult carcass148 ± 174 of 4 3.10Up
Larval CNS27 ± 54 of 4 0.57Down
Larval Salivary gland33 ± 50 of 4 0.71None
Larval midgut7 ± 10 of 4 0.16Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut125 ± 84 of 4 2.64Up
Larval fat body7 ± 40 of 4 0.10Down
Larval trachea611 ± 1204 of 412.89Up
Larval carcass70 ± 54 of 4 1.50Up
S2 cells (growing)7 ± 10 of 4 0.15Down
Whole fly47 ± 34 of 4

Looking for CG14984-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime