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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14990-RA through 18771 annotations produced 1 hits



/// (CG14990 /// DsecCG14990):

Annotation Number : CG14990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035496
Gbrowse : chr3L:4093205-4094344 (+) // 100.0 //
Probeset : 1628332_at
Accessions : protein= NP_647856;, nucleotide= NM_139599;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035496.
BDGP gene expression has embryonic in situ data for CG14990: 4 pix of staining in 1 body parts.
Homophila reports that CG14990 is a close match (1e-11) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 3 RNAi stocks for FBgn0035496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.12Down
Crop3 ± 00 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule6 ± 20 of 4 0.20Down
Hindgut20 ± 14 of 4 0.60Down
Heart388 ± 224 of 410.55Up
Fat body627 ± 724 of 417.06Up
Ovary3 ± 00 of 4 0.10Down
Testis8 ± 00 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca757 ± 344 of 420.60Up
Mated spermatheca721 ± 304 of 419.61Up
Adult carcass246 ± 114 of 4 6.70Up
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland24 ± 24 of 4 0.66Down
Larval midgut69 ± 54 of 4 1.89Up
Larval tubule47 ± 74 of 4 1.30None
Larval hindgut20 ± 34 of 4 0.55Down
Larval fat body1602 ± 1924 of 443.60Up
Larval trachea11 ± 51 of 4 0.31Down
Larval carcass5 ± 20 of 4 0.16Down
S2 cells (growing)17 ± 14 of 4 0.49Down
Whole fly36 ± 04 of 4

Looking for CG14990-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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