FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14991-RA through 18771 annotations produced 1 hits

Fermitin 1 /// ran (Fit1 /// ran):

Annotation Number : CG14991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035498
Gbrowse : chr3L:4103566-4107121 (+) // 100.0 //
Probeset : 1637149_s_at
Accessions : protein= NP_647858; /// NP_728936;, nucleotide= NM_139601; /// NM_168060;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0035498.
BDGP gene expression has embryonic in situ data for CG14991: 4 pix of staining in 1 body parts.
Homophila reports that CG14991 is a close match (7e-142) to human gene C20orf42;KIND1;URP1 (NP_060141), a gene associated with Kindler syndrome, 173650 (3).
BioGrid reports that CG14991 interacts with CG18854 .
TRiP has 1 RNAi stocks for FBgn0035498 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035498 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	342 ± 6	4 of 4	0.90	Down
Head	410 ± 19	4 of 4	1.10	None
Eye	362 ± 3	4 of 4	0.93	None
Thoracicoabdominal ganglion	399 ± 10	4 of 4	1.00	None
Salivary gland	1447 ± 35	4 of 4	3.71	Up
Crop	1337 ± 32	4 of 4	3.40	Up
Midgut	712 ± 3	4 of 4	1.80	Up
Tubule	911 ± 153	4 of 4	2.30	Up
Hindgut	832 ± 10	4 of 4	2.10	Up
Heart	1799 ± 63	4 of 4	4.62	Up
Fat body	694 ± 59	4 of 4	1.78	Up
Ovary	520 ± 8	4 of 4	1.30	Up
Testis	240 ± 5	4 of 4	0.60	Down
Male accessory glands	1061 ± 21	4 of 4	2.70	Up
Virgin spermatheca	758 ± 35	4 of 4	1.95	Up
Mated spermatheca	882 ± 41	4 of 4	2.27	Up
Adult carcass	717 ± 16	4 of 4	1.80	Up
Larval CNS	350 ± 21	4 of 4	0.90	None
Larval Salivary gland	975 ± 30	4 of 4	2.50	Up
Larval midgut	724 ± 32	4 of 4	1.86	Up
Larval tubule	581 ± 19	4 of 4	1.50	Up
Larval hindgut	655 ± 27	4 of 4	1.68	Up
Larval fat body	1345 ± 136	4 of 4	3.50	Up
Larval trachea	614 ± 26	4 of 4	1.58	Up
Larval carcass	818 ± 42	4 of 4	2.10	Up
S2 cells (growing)	315 ± 4	4 of 4	0.81	Down
Whole fly	389 ± 13	4 of 4

Looking for CG14991-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720