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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14992-RA through 18771 annotations produced 1 hits



Ack (Ack):

Annotation Number : CG14992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028484
Gbrowse : chr3L:4108204-4114157 (+) // 99.91 //
Probeset : 1640661_at
Accessions : protein= NP_647859;, nucleotide= NM_139602;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0028484.
BDGP gene expression has embryonic in situ data for Ack: 10 pix of staining in 3 body parts.
Homophila reports that CG14992 is a close match (1e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
BioGrid reports that CG14992 interacts with CG6757 CG6757 .
TRiP has 4 RNAi stocks for FBgn0028484 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 114 of 4 2.10Up
Head129 44 of 4 1.20None
Eye115 124 of 4 1.04None
Thoracicoabdominal ganglion232 84 of 4 2.10Up
Salivary gland182 164 of 4 1.64Up
Crop226 114 of 4 2.00Up
Midgut21 32 of 4 0.20Down
Tubule40 34 of 4 0.40Down
Hindgut145 44 of 4 1.30Up
Heart76 54 of 4 0.68Down
Fat body78 154 of 4 0.71Down
Ovary131 74 of 4 1.20None
Testis398 94 of 4 3.60Up
Male accessory glands87 54 of 4 0.80None
Virgin spermatheca90 124 of 4 0.81None
Mated spermatheca72 154 of 4 0.65None
Adult carcass96 94 of 4 0.90None
Larval CNS162 64 of 4 1.47Up
Larval Salivary gland117 104 of 4 1.05None
Larval midgut35 101 of 4 0.32Down
Larval tubule43 34 of 4 0.40Down
Larval hindgut92 64 of 4 0.83None
Larval fat body89 174 of 4 0.80None
Larval trachea97 64 of 4 0.87None
Larval carcass98 84 of 4 0.89None
S2 cells (growing)272 74 of 4 2.45Up
Whole fly111 94 of 4

Looking for CG14992-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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