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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14995-RA through 18771 annotations produced 1 hits



Gandalf (CG14995):

Annotation Number : CG14995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035497
Gbrowse : chr3L:4094337-4102918 (-) // 100.0 //
Probeset : 1625196_a_at
Accessions : protein= NP_001163342; /// NP_001163343; /// NP_647857; /// NP_728933; /// NP_728934; /// NP_728935;, nucleotide= NM_001169871; /// NM_001169872; /// NM_139600; /// NM_168057; /// NM_168058; /// NM_168059;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0035497.
BDGP gene expression has embryonic in situ data for CG14995: 15 pix of staining in 8 body parts.
BioGrid reports that CG14995 interacts with CG14995 CG15208 CG2174 CG4799 CG6569 .
VDRC has 1 RNAi stocks for FBgn0035497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 ± 84 of 4 0.50Down
Head298 ± 134 of 4 0.50Down
Eye397 ± 54 of 4 0.68Down
Thoracicoabdominal ganglion259 ± 64 of 4 0.40Down
Salivary gland147 ± 94 of 4 0.25Down
Crop445 ± 124 of 4 0.80None
Midgut106 ± 44 of 4 0.20Down
Tubule126 ± 84 of 4 0.20Down
Hindgut199 ± 64 of 4 0.30Down
Heart77 ± 44 of 4 0.13Down
Fat body99 ± 104 of 4 0.17Down
Ovary162 ± 14 of 4 0.30Down
Testis2565 ± 454 of 4 4.40Up
Male accessory glands322 ± 94 of 4 0.50Down
Virgin spermatheca193 ± 124 of 4 0.33Down
Mated spermatheca180 ± 134 of 4 0.31Down
Adult carcass335 ± 134 of 4 0.60Down
Larval CNS156 ± 124 of 4 0.27Down
Larval Salivary gland34 ± 34 of 4 0.06Down
Larval midgut39 ± 24 of 4 0.07Down
Larval tubule62 ± 64 of 4 0.10Down
Larval hindgut88 ± 94 of 4 0.15Down
Larval fat body582 ± 2894 of 4 1.00None
Larval trachea130 ± 274 of 4 0.22Down
Larval carcass254 ± 244 of 4 0.43Down
S2 cells (growing)80 ± 34 of 4 0.14Down
Whole fly587 ± 494 of 4

Looking for CG14995-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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