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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14996-RB through 18771 annotations produced 1 hits



Chd64 (Chd64):

Annotation Number : CG14996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035499
Gbrowse : chr3L:4114288-4122423 (-) // 100.0 //
Probeset : 1635828_at
Accessions : protein= NP_647860;, nucleotide= NM_139603;
Pathway : 0005865 // striated muscle thin filament // inferred from sequence or structural similarity
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0035499.
BDGP gene expression has embryonic in situ data for Chd64: 49 pix of staining in 18 body parts.
BioGrid reports that CG14996 interacts with CG15572 CG18584 CG1999 CG3099 CG31361 CG32514 CG33141 CG4282 CG6172 CG6741 .
VDRC has 2 RNAi stocks for FBgn0035499 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1016 ± 304 of 4 1.10Up
Head1436 ± 444 of 4 1.60Up
Eye3892 ± 1964 of 4 4.39Up
Thoracicoabdominal ganglion1462 ± 614 of 4 1.60Up
Salivary gland517 ± 244 of 4 0.58Down
Crop2043 ± 304 of 4 2.30Up
Midgut2458 ± 434 of 4 2.80Up
Tubule669 ± 274 of 4 0.80Down
Hindgut2291 ± 274 of 4 2.60Up
Heart1259 ± 1104 of 4 1.42Up
Fat body1124 ± 464 of 4 1.27Up
Ovary672 ± 274 of 4 0.80Down
Testis491 ± 164 of 4 0.60Down
Male accessory glands3169 ± 464 of 4 3.60Up
Virgin spermatheca1174 ± 234 of 4 1.32Up
Mated spermatheca1847 ± 1584 of 4 2.08Up
Adult carcass851 ± 184 of 4 1.00None
Larval CNS689 ± 984 of 4 0.78Down
Larval Salivary gland4479 ± 694 of 4 5.05Up
Larval midgut4400 ± 1284 of 4 4.96Up
Larval tubule2759 ± 874 of 4 3.10Up
Larval hindgut3700 ± 644 of 4 4.17Up
Larval fat body3757 ± 3614 of 4 4.20Up
Larval trachea2708 ± 2144 of 4 3.05Up
Larval carcass1863 ± 1424 of 4 2.10Up
S2 cells (growing)3342 ± 344 of 4 3.77Up
Whole fly887 ± 164 of 4

Looking for CG14996-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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