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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14997-RB through 18771 annotations produced 1 hits



(CG14997):

Annotation Number : CG14997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035515
Gbrowse : chr3L:4240172-4242603 (+) // 100.0 //
Probeset : 1633558_s_at
Accessions : protein= NP_647877; /// NP_728963;, nucleotide= NM_139620; /// NM_168071;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0035515.
VDRC has 3 RNAi stocks for FBgn0035515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 74 of 4 0.70None
Head186 154 of 4 1.00None
Eye124 54 of 4 0.69Down
Thoracicoabdominal ganglion178 94 of 4 1.00None
Salivary gland159 14 of 4 0.89None
Crop559 184 of 4 3.10Up
Midgut267 54 of 4 1.50Up
Tubule267 144 of 4 1.50Up
Hindgut335 204 of 4 1.90Up
Heart219 34 of 4 1.22None
Fat body225 254 of 4 1.25None
Ovary175 74 of 4 1.00None
Testis98 54 of 4 0.50Down
Male accessory glands229 64 of 4 1.30Up
Virgin spermatheca1056 364 of 4 5.87Up
Mated spermatheca796 184 of 4 4.43Up
Adult carcass190 154 of 4 1.10None
Larval CNS183 134 of 4 1.02None
Larval Salivary gland132 64 of 4 0.74None
Larval midgut277 124 of 4 1.54Up
Larval tubule254 84 of 4 1.40Up
Larval hindgut372 154 of 4 2.07Up
Larval fat body1013 824 of 4 5.60Up
Larval trachea1832 1284 of 410.19Up
Larval carcass202 94 of 4 1.13None
S2 cells (growing)189 54 of 4 1.05None
Whole fly179 164 of 4

Looking for CG14997-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime