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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15004-RA through 18771 annotations produced 1 hits



tipE homolog 2 (Teh2):

Annotation Number : CG15004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035505
Gbrowse : chr3L:4179541-4181801 (-) // 100.0 //
Probeset : 1640831_at
Accessions : protein= NP_001163345; /// NP_647867;, nucleotide= NM_001169874; /// NM_139610;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035505.
BioGrid reports that CG15004 interacts with CG4073 .
VDRC has 2 RNAi stocks for FBgn0035505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 ± 74 of 415.90Up
Head62 ± 64 of 4 5.40Up
Eye123 ± 124 of 410.66Up
Thoracicoabdominal ganglion155 ± 154 of 413.50Up
Salivary gland1 ± 00 of 4 0.10Down
Crop4 ± 10 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.30Down
Heart5 ± 10 of 4 0.48Down
Fat body5 ± 10 of 4 0.48Down
Ovary1 ± 00 of 4 0.20Down
Testis3 ± 10 of 4 0.30Down
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca3 ± 00 of 4 0.31Down
Mated spermatheca3 ± 10 of 4 0.32Down
Adult carcass16 ± 33 of 4 1.40None
Larval CNS28 ± 44 of 4 2.48Up
Larval Salivary gland4 ± 10 of 4 0.36Down
Larval midgut1 ± 00 of 4 0.13Down
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.40Down
Larval fat body4 ± 10 of 4 0.40Down
Larval trachea4 ± 20 of 4 0.40Down
Larval carcass1 ± 00 of 4 0.16Down
S2 cells (growing)2 ± 00 of 4 0.26Down
Whole fly11 ± 04 of 4

Looking for CG15004-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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