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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1501-RA through 18771 annotations produced 1 hits



section 5 (unc):

Annotation Number : CG1501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003950
Gbrowse : chrX:20982440-20987370 (-) // 100.0 //
Probeset : 1637035_at
Accessions : protein= NP_608435;, nucleotide= NM_134591;
Pathway : 0005814 // centriole // inferred from direct assay /// 0005932 // microtubule basal body // inferred from direct assay
FlyMine data for FBgn0003950.
TRiP has 1 RNAi stocks for FBgn0003950 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20Down
Head1 00 of 4 0.30Down
Eye0 00 of 4 0.14Down
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland10 41 of 4 2.93None
Crop2 00 of 4 0.60None
Midgut1 00 of 4 0.30Down
Tubule1 00 of 4 0.30Down
Hindgut1 10 of 4 0.50None
Heart2 10 of 4 0.61None
Fat body1 00 of 4 0.46None
Ovary1 00 of 4 0.30Down
Testis29 24 of 4 8.20Up
Male accessory glands1 00 of 4 0.40Down
Virgin spermatheca1 00 of 4 0.30Down
Mated spermatheca1 00 of 4 0.40None
Adult carcass3 10 of 4 1.00None
Larval CNS3 20 of 4 0.86None
Larval Salivary gland0 00 of 4 0.18Down
Larval midgut1 00 of 4 0.49None
Larval tubule1 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.34Down
Larval fat body5 31 of 4 1.60None
Larval trachea2 20 of 4 0.60None
Larval carcass2 00 of 4 0.57None
S2 cells (growing)10 01 of 4 2.94Up
Whole fly3 00 of 4

Looking for CG1501-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime