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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15012-RB through 18771 annotations produced 1 hits



(CG15012):

Annotation Number : CG15012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035528
Gbrowse : chr3L:4291199-4292389 (-) // 100.0 //
Probeset : 1630306_at
Accessions : protein= NP_001163347; /// NP_647888;, nucleotide= NM_001169876; /// NM_139631;
Interpro : "0004563 // beta-N-acetylhexosaminidase activity // inferred from sequence or structural similarity /// 0004563 // beta-
FlyMine data for FBgn0035528.
BioGrid reports that CG15012 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0035528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain510 184 of 4 1.50Up
Head524 144 of 4 1.60Up
Eye740 514 of 4 2.22Up
Thoracicoabdominal ganglion580 164 of 4 1.70Up
Salivary gland693 114 of 4 2.08Up
Crop557 104 of 4 1.70Up
Midgut460 94 of 4 1.40Up
Tubule904 244 of 4 2.70Up
Hindgut510 24 of 4 1.50Up
Heart535 24 of 4 1.61Up
Fat body648 454 of 4 1.95Up
Ovary317 24 of 4 1.00None
Testis234 144 of 4 0.70Down
Male accessory glands534 324 of 4 1.60Up
Virgin spermatheca701 194 of 4 2.11Up
Mated spermatheca774 54 of 4 2.33Up
Adult carcass580 224 of 4 1.70Up
Larval CNS549 644 of 4 1.65Up
Larval Salivary gland465 234 of 4 1.40Up
Larval midgut461 154 of 4 1.39Up
Larval tubule1388 324 of 4 4.20Up
Larval hindgut515 294 of 4 1.55Up
Larval fat body832 1054 of 4 2.50Up
Larval trachea663 834 of 4 1.99Up
Larval carcass570 454 of 4 1.71Up
S2 cells (growing)791 84 of 4 2.38Up
Whole fly332 224 of 4

Looking for CG15012-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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