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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15013-RB through 18771 annotations produced 1 hits



dusky-like (dyl):

Annotation Number : CG15013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0066365
Gbrowse : chr3L:4293994-4307711 (-) // 100.0 //
Probeset : 1628067_s_at
Accessions : protein= NP_647890; /// NP_728979; /// NP_728980;, nucleotide= NM_139633; /// NM_168078; /// NM_168079;
Pathway : 0031941 // filamentous actin // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity
FlyMine data for FBgn0066365.
VDRC has 3 RNAi stocks for FBgn0066365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head4 11 of 4 0.60None
Eye7 32 of 4 1.08None
Thoracicoabdominal ganglion2 10 of 4 0.30None
Salivary gland8 21 of 4 1.12None
Crop6 11 of 4 0.80None
Midgut4 00 of 4 0.60None
Tubule2 00 of 4 0.30Down
Hindgut1 10 of 4 0.20None
Heart5 10 of 4 0.75None
Fat body6 10 of 4 0.96None
Ovary1 00 of 4 0.10None
Testis6 03 of 4 0.90None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca3 10 of 4 0.51None
Mated spermatheca2 10 of 4 0.35None
Adult carcass5 10 of 4 0.80None
Larval CNS1 10 of 4 0.17None
Larval Salivary gland2 00 of 4 0.33None
Larval midgut5 10 of 4 0.76None
Larval tubule1 00 of 4 0.20None
Larval hindgut27 64 of 4 3.81None
Larval fat body4 10 of 4 0.70None
Larval trachea2 10 of 4 0.35None
Larval carcass3 10 of 4 0.45None
S2 cells (growing)1 00 of 4 0.15None
Whole fly7 21 of 4

Looking for CG15013-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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