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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15019-RA through 18771 annotations produced 1 hits



(CG15019):

Annotation Number : CG15019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035541
Gbrowse : chr3L:4405360-4405970 (-) // 100.0 //
Probeset : 1634687_at
Accessions : protein= NP_001097502; /// NP_647899;, nucleotide= NM_001104032; /// NM_139642;
FlyMine data for FBgn0035541.
VDRC has 2 RNAi stocks for FBgn0035541 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain155 54 of 4 0.40Down
Head283 134 of 4 0.70Down
Eye138 34 of 4 0.34Down
Thoracicoabdominal ganglion181 64 of 4 0.50Down
Salivary gland319 104 of 4 0.80Down
Crop335 74 of 4 0.80Down
Midgut308 124 of 4 0.80Down
Tubule459 294 of 4 1.10None
Hindgut287 94 of 4 0.70Down
Heart247 94 of 4 0.62Down
Fat body393 204 of 4 0.98None
Ovary802 104 of 4 2.00Up
Testis50 24 of 4 0.10Down
Male accessory glands896 274 of 4 2.20Up
Virgin spermatheca560 324 of 4 1.40Up
Mated spermatheca732 344 of 4 1.83Up
Adult carcass289 174 of 4 0.70Down
Larval CNS409 154 of 4 1.02None
Larval Salivary gland512 544 of 4 1.28None
Larval midgut108 94 of 4 0.27Down
Larval tubule156 64 of 4 0.40Down
Larval hindgut271 224 of 4 0.68Down
Larval fat body152 94 of 4 0.40Down
Larval trachea414 574 of 4 1.04None
Larval carcass291 494 of 4 0.73None
S2 cells (growing)486 104 of 4 1.21Up
Whole fly400 194 of 4

Looking for CG15019-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime