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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15033-RA through 18771 annotations produced 1 hits



CheA7a (CheA7a):

Annotation Number : CG15033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029948
Gbrowse : chrX:7272295-7272832 (+) // 100.0 //
Probeset : 1630458_at
Accessions : protein= NP_572395;, nucleotide= NM_132167;
FlyMine data for FBgn0029948.
VDRC has 3 RNAi stocks for FBgn0029948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head5 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion12 ± 43 of 4 0.10Down
Salivary gland9 ± 41 of 4 0.05Down
Crop5 ± 11 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 11 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body7 ± 21 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass1114 ± 584 of 4 5.80Up
Larval CNS3 ± 12 of 4 0.02Down
Larval Salivary gland4 ± 00 of 4 0.02Down
Larval midgut4 ± 21 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.02Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass7 ± 10 of 4 0.04Down
S2 cells (growing)3 ± 10 of 4 0.02Down
Whole fly191 ± 134 of 4

Looking for CG15033-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime