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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15040-RA through 18771 annotations produced 1 hits



(CG15040):

Annotation Number : CG15040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030940
Gbrowse : chrX:18500734-18506606 (-) // 100.0 //
Probeset : 1627070_x_at
Accessions : protein= NP_573311;, nucleotide= NM_133083;
FlyMine data for FBgn0030940.
VDRC has 2 RNAi stocks for FBgn0030940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 14 of 4 0.70None
Head3 ± 01 of 4 0.30Down
Eye3 ± 11 of 4 0.26Down
Thoracicoabdominal ganglion4 ± 12 of 4 0.30Down
Salivary gland3 ± 10 of 4 0.25Down
Crop3 ± 00 of 4 0.30Down
Midgut1 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut2 ± 00 of 4 0.20Down
Heart1 ± 10 of 4 0.16Down
Fat body21 ± 74 of 4 1.84None
Ovary1 ± 00 of 4 0.10Down
Testis107 ± 44 of 4 9.10Up
Male accessory glands5 ± 11 of 4 0.40Down
Virgin spermatheca4 ± 00 of 4 0.36Down
Mated spermatheca3 ± 12 of 4 0.30Down
Adult carcass6 ± 11 of 4 0.60None
Larval CNS7 ± 33 of 4 0.62None
Larval Salivary gland5 ± 12 of 4 0.48Down
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut6 ± 11 of 4 0.50Down
Larval fat body41 ± 184 of 4 3.50None
Larval trachea3 ± 10 of 4 0.27Down
Larval carcass3 ± 00 of 4 0.28Down
S2 cells (growing)4 ± 01 of 4 0.35Down
Whole fly11 ± 14 of 4

Looking for CG15040-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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