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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15046-RA through 18771 annotations produced 1 hits



(CG15046):

Annotation Number : CG15046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030927
Gbrowse : chrX:18381680-18383519 (-) // 100.0 //
Probeset : 1623986_at
Accessions : protein= NP_573298;, nucleotide= NM_133070;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030927.
VDRC has 3 RNAi stocks for FBgn0030927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.70None
Head25 ± 14 of 4 2.20Up
Eye12 ± 04 of 4 1.10None
Thoracicoabdominal ganglion8 ± 11 of 4 0.70Down
Salivary gland35 ± 34 of 4 3.07Up
Crop27 ± 14 of 4 2.40Up
Midgut17 ± 13 of 4 1.50Up
Tubule8 ± 00 of 4 0.70Down
Hindgut37 ± 34 of 4 3.20Up
Heart20 ± 44 of 4 1.78None
Fat body20 ± 44 of 4 1.79Up
Ovary9 ± 13 of 4 0.90None
Testis4 ± 00 of 4 0.40Down
Male accessory glands17 ± 10 of 4 1.50Up
Virgin spermatheca16 ± 24 of 4 1.46None
Mated spermatheca23 ± 14 of 4 2.03Up
Adult carcass45 ± 74 of 4 3.90Up
Larval CNS8 ± 24 of 4 0.73Down
Larval Salivary gland9 ± 30 of 4 0.82None
Larval midgut14 ± 22 of 4 1.25None
Larval tubule9 ± 12 of 4 0.80None
Larval hindgut58 ± 124 of 4 5.10Up
Larval fat body77 ± 44 of 4 6.70Up
Larval trachea20 ± 04 of 4 1.81Up
Larval carcass29 ± 43 of 4 2.55Up
S2 cells (growing)9 ± 14 of 4 0.85None
Whole fly11 ± 04 of 4

Looking for CG15046-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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