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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15065-RA through 18771 annotations produced 1 hits



(CG15065):

Annotation Number : CG15065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040734
Gbrowse : chr2R:14277462-14277752 (+) // 100.0 //
Probeset : 1631660_at
Accessions : protein= NP_652366;, nucleotide= NM_144109;
FlyMine data for FBgn0040734.
VDRC has 2 RNAi stocks for FBgn0040734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 44 of 4 0.10Down
Head1877 754 of 4 5.40Up
Eye699 824 of 4 2.03Up
Thoracicoabdominal ganglion23 54 of 4 0.10Down
Salivary gland16 53 of 4 0.05Down
Crop40 44 of 4 0.10Down
Midgut7 21 of 4 0.00Down
Tubule35 133 of 4 0.10Down
Hindgut39 114 of 4 0.10Down
Heart468 1484 of 4 1.36None
Fat body1543 5174 of 4 4.48Up
Ovary1 01 of 4 0.00Down
Testis2 11 of 4 0.00Down
Male accessory glands9 32 of 4 0.00Down
Virgin spermatheca788 1344 of 4 2.29Up
Mated spermatheca1003 3134 of 4 2.91None
Adult carcass1452 2954 of 4 4.20Up
Larval CNS3 13 of 4 0.01Down
Larval Salivary gland5 21 of 4 0.02Down
Larval midgut10 22 of 4 0.03Down
Larval tubule5 03 of 4 0.00Down
Larval hindgut6 13 of 4 0.02Down
Larval fat body35 182 of 4 0.10Down
Larval trachea13 191 of 4 0.04Down
Larval carcass11 23 of 4 0.03Down
S2 cells (growing)2 01 of 4 0.01Down
Whole fly344 364 of 4

Looking for CG15065-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime