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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15068-RA through 18771 annotations produced 1 hits



(CG15068):

Annotation Number : CG15068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040733
Gbrowse : chr2R:14277850-14278114 (-) // 97.88 //
Probeset : 1635060_at
Accessions : protein= NP_788402;, nucleotide= NM_176222;
FlyMine data for FBgn0040733.
BioGrid reports that CG15068 interacts with CG4115 CG32036 CG8155 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 104 of 4 0.10Down
Head2653 ± 2144 of 4 2.80Up
Eye1222 ± 2884 of 4 1.29None
Thoracicoabdominal ganglion102 ± 124 of 4 0.10Down
Salivary gland21 ± 43 of 4 0.02Down
Crop88 ± 154 of 4 0.10Down
Midgut7 ± 11 of 4 0.00Down
Tubule66 ± 63 of 4 0.10Down
Hindgut337 ± 394 of 4 0.40Down
Heart2153 ± 3054 of 4 2.27Up
Fat body3771 ± 474 of 4 3.97Up
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 11 of 4 0.00Down
Male accessory glands9 ± 10 of 4 0.00Down
Virgin spermatheca2935 ± 984 of 4 3.09Up
Mated spermatheca1942 ± 2144 of 4 2.05Up
Adult carcass2528 ± 1884 of 4 2.70Up
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland4 ± 11 of 4 0.00Down
Larval midgut12 ± 31 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut15 ± 14 of 4 0.02Down
Larval fat body55 ± 194 of 4 0.10Down
Larval trachea42 ± 304 of 4 0.04Down
Larval carcass144 ± 594 of 4 0.15Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly949 ± 1274 of 4

Looking for CG15068-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime