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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15069-RA through 18771 annotations produced 2 hits



Rgk2 (Rgk2):

Annotation Number : CG15069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085419
Gbrowse : chr2R:14431425-14434513 (+) // 100.0 //
Probeset : 1630558_a_at
Accessions : protein= NP_611342;, nucleotide= NM_137498;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0085419.
Homophila reports that CG15069 is a close match (4e-14) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).
BioGrid reports that CG15069 interacts with CG3035 CG4276 .
VDRC has 4 RNAi stocks for FBgn0085419 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 6.10Up
Head6 ± 10 of 4 1.40None
Eye21 ± 20 of 4 4.46Up
Thoracicoabdominal ganglion15 ± 30 of 4 3.10Up
Salivary gland10 ± 30 of 4 2.17None
Crop4 ± 00 of 4 1.00None
Midgut3 ± 10 of 4 0.70None
Tubule5 ± 10 of 4 1.10None
Hindgut5 ± 10 of 4 1.10None
Heart2 ± 10 of 4 0.63None
Fat body5 ± 10 of 4 1.10None
Ovary2 ± 00 of 4 0.50None
Testis5 ± 10 of 4 1.20None
Male accessory glands5 ± 10 of 4 1.20None
Virgin spermatheca0 ± 00 of 4 0.16Down
Mated spermatheca3 ± 10 of 4 0.66None
Adult carcass9 ± 21 of 4 2.10None
Larval CNS7 ± 10 of 4 1.48None
Larval Salivary gland5 ± 20 of 4 1.24None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule3 ± 00 of 4 0.60None
Larval hindgut4 ± 10 of 4 0.93None
Larval fat body10 ± 20 of 4 2.30None
Larval trachea1 ± 10 of 4 0.33None
Larval carcass7 ± 20 of 4 1.56None
S2 cells (growing)2 ± 00 of 4 0.45None
Whole fly4 ± 10 of 4



Rgk2 (Rgk2):

Annotation Number : CG30119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085419
Gbrowse : chr2R:14427089-14427727 (+) // 100.0 //
Probeset : 1635217_at
Accessions : protein= NP_611342;, nucleotide= NM_137498;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0085419.
VDRC has 4 RNAi stocks for FBgn0085419 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 7.60Up
Head5 ± 10 of 4 6.30Up
Eye7 ± 11 of 4 8.00Up
Thoracicoabdominal ganglion4 ± 10 of 4 4.80None
Salivary gland5 ± 30 of 4 6.25None
Crop3 ± 10 of 4 3.50None
Midgut4 ± 20 of 4 4.70None
Tubule8 ± 00 of 4 8.90Up
Hindgut6 ± 10 of 4 7.40Up
Heart4 ± 00 of 4 4.81Up
Fat body8 ± 40 of 4 9.19Up
Ovary4 ± 10 of 4 4.60None
Testis2 ± 00 of 4 3.10None
Male accessory glands8 ± 31 of 4 9.90None
Virgin spermatheca5 ± 00 of 4 6.00Up
Mated spermatheca6 ± 10 of 4 7.28Up
Adult carcass7 ± 10 of 4 8.50Up
Larval CNS5 ± 20 of 4 6.44Up
Larval Salivary gland8 ± 31 of 4 9.72None
Larval midgut7 ± 10 of 4 8.19Up
Larval tubule4 ± 01 of 4 5.00Up
Larval hindgut7 ± 11 of 4 8.25Up
Larval fat body4 ± 10 of 4 5.40None
Larval trachea6 ± 21 of 4 7.06Up
Larval carcass11 ± 11 of 412.36Up
S2 cells (growing)7 ± 01 of 4 8.56Up
Whole fly0 ± 00 of 4

Looking for CG15069-RA. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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