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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15080-RA through 18771 annotations produced 1 hits



(CG15080):

Annotation Number : CG15080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034391
Gbrowse : chr2R:14670805-14682105 (+) // 100.0 //
Probeset : 1629693_at
Accessions : protein= NP_611374;, nucleotide= NM_137530;
FlyMine data for FBgn0034391.
BioGrid reports that CG15080 interacts with CG2560 CG5327 CG7158 CG8634 CG8784 CG8975 CG15697 CG2087 CG32732 CG6258 CG6359 CG7456 CG7730 CG8487 CG9083 CG9184 CG9205 CG9734 .
VDRC has 1 RNAi stocks for FBgn0034391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.30Down
Head5 ± 10 of 4 0.30Down
Eye10 ± 12 of 4 0.56None
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland8 ± 20 of 4 0.44None
Crop6 ± 20 of 4 0.40Down
Midgut5 ± 20 of 4 0.30Down
Tubule7 ± 10 of 4 0.40Down
Hindgut3 ± 10 of 4 0.20Down
Heart3 ± 10 of 4 0.22Down
Fat body13 ± 40 of 4 0.77None
Ovary8 ± 10 of 4 0.50None
Testis4 ± 10 of 4 0.20Down
Male accessory glands10 ± 40 of 4 0.60None
Virgin spermatheca4 ± 00 of 4 0.23Down
Mated spermatheca7 ± 10 of 4 0.40None
Adult carcass8 ± 20 of 4 0.50None
Larval CNS7 ± 20 of 4 0.41None
Larval Salivary gland6 ± 20 of 4 0.35Down
Larval midgut5 ± 20 of 4 0.30Down
Larval tubule3 ± 00 of 4 0.20Down
Larval hindgut9 ± 10 of 4 0.53None
Larval fat body3 ± 10 of 4 0.20Down
Larval trachea6 ± 10 of 4 0.34Down
Larval carcass10 ± 00 of 4 0.59None
S2 cells (growing)7 ± 20 of 4 0.41None
Whole fly18 ± 31 of 4

Looking for CG15080-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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