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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15085-RA through 18771 annotations produced 1 hits



chr2R:14555025-14561037 (-) // 100.0 // (ets domain lacking):

Annotation Number : CG15085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630707_at
Accessions : protein= , nucleotide= NP_523786;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from physical interaction /// 0007423 // sensory organ development // inferred from mutant ph
FlyMine data for full length.
BioGrid reports that CG15085 interacts with CG17077 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 4 0.30Down
Head73 ± 34 of 4 1.50Up
Eye57 ± 34 of 4 1.16None
Thoracicoabdominal ganglion46 ± 34 of 4 0.90None
Salivary gland120 ± 74 of 4 2.44Up
Crop279 ± 134 of 4 5.60Up
Midgut101 ± 84 of 4 2.10Up
Tubule80 ± 104 of 4 1.60Up
Hindgut82 ± 44 of 4 1.70Up
Heart89 ± 24 of 4 1.81Up
Fat body67 ± 124 of 4 1.37None
Ovary20 ± 14 of 4 0.40Down
Testis29 ± 24 of 4 0.60Down
Male accessory glands214 ± 34 of 4 4.30Up
Virgin spermatheca87 ± 24 of 4 1.76Up
Mated spermatheca115 ± 114 of 4 2.33Up
Adult carcass88 ± 24 of 4 1.80Up
Larval CNS173 ± 84 of 4 3.50Up
Larval Salivary gland73 ± 74 of 4 1.49Up
Larval midgut110 ± 64 of 4 2.23Up
Larval tubule96 ± 44 of 4 2.00Up
Larval hindgut51 ± 44 of 4 1.04None
Larval fat body91 ± 74 of 4 1.90Up
Larval trachea126 ± 94 of 4 2.56Up
Larval carcass87 ± 204 of 4 1.77None
S2 cells (growing)821 ± 94 of 416.61Up
Whole fly49 ± 44 of 4

Looking for CG15085-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime