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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15087-RA through 18771 annotations produced 1 hits



(CG15087):

Annotation Number : CG15087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034380
Gbrowse : chr2R:14595651-14598365 (-) // 100.0 //
Probeset : 1622971_at
Accessions : protein= NP_611363;, nucleotide= NM_137519;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034380.
BDGP gene expression has embryonic in situ data for CG15087: 8 pix of staining in 1 body parts.
BioGrid reports that CG15087 interacts with CG16728 CG3250 CG16858 CG3249 CG32584 CG8374 .
TRiP has 1 RNAi stocks for FBgn0034380 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 44 of 4 2.00Up
Head87 44 of 4 1.00None
Eye85 44 of 4 0.94None
Thoracicoabdominal ganglion200 84 of 4 2.20Up
Salivary gland111 54 of 4 1.22Up
Crop54 24 of 4 0.60Down
Midgut54 24 of 4 0.60Down
Tubule53 14 of 4 0.60Down
Hindgut66 24 of 4 0.70Down
Heart39 14 of 4 0.43Down
Fat body50 54 of 4 0.56Down
Ovary151 24 of 4 1.70Up
Testis130 04 of 4 1.40Up
Male accessory glands165 144 of 4 1.80Up
Virgin spermatheca36 24 of 4 0.40Down
Mated spermatheca44 24 of 4 0.48Down
Adult carcass43 34 of 4 0.50Down
Larval CNS143 64 of 4 1.57Up
Larval Salivary gland139 84 of 4 1.53Up
Larval midgut45 54 of 4 0.50Down
Larval tubule87 14 of 4 1.00None
Larval hindgut64 44 of 4 0.71Down
Larval fat body88 24 of 4 1.00None
Larval trachea87 84 of 4 0.96None
Larval carcass55 34 of 4 0.61Down
S2 cells (growing)69 24 of 4 0.76Down
Whole fly91 54 of 4

Looking for CG15087-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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