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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15088-RB through 18771 annotations produced 2 hits



(CG15088):

Annotation Number : CG15088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034381
Gbrowse : chr2R:14615659-14617763 (-) // 100.0 //
Probeset : 1626311_at
Accessions : protein= NP_611364; /// NP_788408;, nucleotide= NM_137520; /// NM_176228;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034381.
Homophila reports that CG15088 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0034381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 14 of 4 4.90Up
Head5 ± 11 of 4 0.90None
Eye8 ± 01 of 4 1.57None
Thoracicoabdominal ganglion27 ± 14 of 4 5.00Up
Salivary gland21 ± 50 of 4 3.90None
Crop6 ± 10 of 4 1.20None
Midgut6 ± 20 of 4 1.10None
Tubule38 ± 64 of 4 7.10Up
Hindgut23 ± 14 of 4 4.30Up
Heart1 ± 00 of 4 0.28Down
Fat body9 ± 31 of 4 1.65None
Ovary1 ± 00 of 4 0.30Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands5 ± 20 of 4 1.10None
Virgin spermatheca1 ± 00 of 4 0.30Down
Mated spermatheca6 ± 20 of 4 1.14None
Adult carcass4 ± 10 of 4 0.70None
Larval CNS9 ± 24 of 4 1.80Up
Larval Salivary gland4 ± 10 of 4 0.75None
Larval midgut3 ± 10 of 4 0.57None
Larval tubule18 ± 33 of 4 3.40Up
Larval hindgut9 ± 10 of 4 1.80None
Larval fat body5 ± 20 of 4 1.00None
Larval trachea4 ± 20 of 4 0.78None
Larval carcass2 ± 00 of 4 0.37None
S2 cells (growing)4 ± 10 of 4 0.80None
Whole fly5 ± 10 of 4



(CG15088):

Annotation Number : CG15088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034381
Gbrowse : chr2R:14615659-14617763 (-) // 100.0 //
Probeset : 1632986_a_at
Accessions : protein= NP_611364; /// NP_788408;, nucleotide= NM_137520; /// NM_176228;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034381.
Homophila reports that CG15088 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0034381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 ± 24 of 413.70Up
Head73 ± 54 of 4 4.30Up
Eye34 ± 24 of 4 2.04Up
Thoracicoabdominal ganglion236 ± 124 of 414.10Up
Salivary gland7 ± 20 of 4 0.44None
Crop2 ± 10 of 4 0.10Down
Midgut0 ± 00 of 4 0.10Down
Tubule409 ± 224 of 424.40Up
Hindgut267 ± 144 of 415.90Up
Heart3 ± 00 of 4 0.18Down
Fat body3 ± 40 of 4 0.18Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands3 ± 30 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.04Down
Adult carcass5 ± 40 of 4 0.30None
Larval CNS25 ± 44 of 4 1.53None
Larval Salivary gland3 ± 10 of 4 0.22Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule101 ± 114 of 4 6.00Up
Larval hindgut36 ± 34 of 4 2.20Up
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.12Down
Larval carcass4 ± 10 of 4 0.25Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly16 ± 34 of 4

Looking for CG15088-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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