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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15094-RA through 18771 annotations produced 1 hits



(CG15094):

Annotation Number : CG15094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034392
Gbrowse : chr2R:14682122-14684181 (-) // 100.0 //
Probeset : 1634952_s_at
Accessions : protein= NP_611375; /// NP_725828;, nucleotide= NM_137531; /// NM_166308;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0034392.
BDGP gene expression has embryonic in situ data for CG15094: 20 pix of staining in 7 body parts.
Homophila reports that CG15094 is a close match (6e-63) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
BioGrid reports that CG15094 interacts with CG2830 .
VDRC has 2 RNAi stocks for FBgn0034392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 14 of 4 1.30Up
Head66 64 of 4 1.20None
Eye89 24 of 4 1.65Up
Thoracicoabdominal ganglion96 34 of 4 1.80Up
Salivary gland1595 1134 of 429.45Up
Crop91 34 of 4 1.70Up
Midgut150 34 of 4 2.80Up
Tubule148 24 of 4 2.70Up
Hindgut149 44 of 4 2.80Up
Heart190 64 of 4 3.52Up
Fat body90 74 of 4 1.66Up
Ovary72 64 of 4 1.30None
Testis26 14 of 4 0.50Down
Male accessory glands602 714 of 411.10Up
Virgin spermatheca91 34 of 4 1.69Up
Mated spermatheca81 34 of 4 1.50Up
Adult carcass107 64 of 4 2.00Up
Larval CNS53 24 of 4 0.99None
Larval Salivary gland64 34 of 4 1.19None
Larval midgut222 124 of 4 4.11Up
Larval tubule134 74 of 4 2.50Up
Larval hindgut111 44 of 4 2.06Up
Larval fat body23 31 of 4 0.40Down
Larval trachea106 134 of 4 1.96Up
Larval carcass145 54 of 4 2.68Up
S2 cells (growing)416 54 of 4 7.69Up
Whole fly54 24 of 4

Looking for CG15094-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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