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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15095-RB through 18771 annotations produced 1 hits



lethal (2) 08717 (l(2)08717):

Annotation Number : CG15095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010651
Gbrowse : chr2R:14684768-14691232 (-) // 100.0 //
Probeset : 1636620_s_at
Accessions : protein= NP_652038; /// NP_725829;, nucleotide= NM_143781; /// NM_166309;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0010651.
BDGP gene expression has embryonic in situ data for l(2)08717: 43 pix of staining in 17 body parts.
Homophila reports that CG15095 is a close match (5e-67) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
TRiP has 1 RNAi stocks for FBgn0010651 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 74 of 4 0.50Down
Head207 ± 204 of 4 1.30None
Eye131 ± 114 of 4 0.83None
Thoracicoabdominal ganglion91 ± 64 of 4 0.60Down
Salivary gland3163 ± 1194 of 419.95Up
Crop392 ± 44 of 4 2.50Up
Midgut299 ± 164 of 4 1.90Up
Tubule2878 ± 2064 of 418.20Up
Hindgut364 ± 64 of 4 2.30Up
Heart324 ± 124 of 4 2.05Up
Fat body512 ± 314 of 4 3.23Up
Ovary19 ± 13 of 4 0.10Down
Testis40 ± 24 of 4 0.30Down
Male accessory glands104 ± 124 of 4 0.70Down
Virgin spermatheca421 ± 194 of 4 2.66Up
Mated spermatheca462 ± 94 of 4 2.92Up
Adult carcass429 ± 264 of 4 2.70Up
Larval CNS53 ± 104 of 4 0.34Down
Larval Salivary gland60 ± 84 of 4 0.38Down
Larval midgut256 ± 334 of 4 1.62None
Larval tubule1061 ± 204 of 4 6.70Up
Larval hindgut1609 ± 2144 of 410.15Up
Larval fat body479 ± 534 of 4 3.00Up
Larval trachea75 ± 144 of 4 0.47Down
Larval carcass85 ± 74 of 4 0.54Down
S2 cells (growing)293 ± 294 of 4 1.85Up
Whole fly158 ± 154 of 4

Looking for CG15095-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime