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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15096-RA through 18771 annotations produced 1 hits



(CG15096):

Annotation Number : CG15096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034394
Gbrowse : chr2R:14695840-14702514 (-) // 100.0 //
Probeset : 1634762_a_at
Accessions : protein= NP_611376; /// NP_725830;, nucleotide= NM_137532; /// NM_166310;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005316 // high affinity inorganic phosphate:
FlyMine data for FBgn0034394.
Homophila reports that CG15096 is a close match (2e-69) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
BioGrid reports that CG15096 interacts with CG17358 .
VDRC has 3 RNAi stocks for FBgn0034394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 84 of 4 0.10Down
Head1588 ± 1214 of 4 2.10Up
Eye1417 ± 2734 of 4 1.88None
Thoracicoabdominal ganglion94 ± 74 of 4 0.10Down
Salivary gland53 ± 54 of 4 0.07Down
Crop203 ± 114 of 4 0.30Down
Midgut2909 ± 2084 of 4 3.90Up
Tubule1537 ± 3164 of 4 2.00Up
Hindgut231 ± 174 of 4 0.30Down
Heart3228 ± 2584 of 4 4.29Up
Fat body3917 ± 4094 of 4 5.20Up
Ovary12 ± 13 of 4 0.00Down
Testis138 ± 64 of 4 0.20Down
Male accessory glands1016 ± 334 of 4 1.40Up
Virgin spermatheca4593 ± 1554 of 4 6.10Up
Mated spermatheca4139 ± 1614 of 4 5.50Up
Adult carcass2932 ± 1394 of 4 3.90Up
Larval CNS7 ± 53 of 4 0.01Down
Larval Salivary gland9 ± 20 of 4 0.01Down
Larval midgut1013 ± 1354 of 4 1.35None
Larval tubule1185 ± 1414 of 4 1.60Up
Larval hindgut600 ± 744 of 4 0.80None
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea194 ± 414 of 4 0.26Down
Larval carcass438 ± 904 of 4 0.58Down
S2 cells (growing)33 ± 14 of 4 0.04Down
Whole fly752 ± 514 of 4

Looking for CG15096-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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