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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15097-RB through 18771 annotations produced 1 hits


Annotation Number : CG15097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034396
Gbrowse : chr2R:14709682-14713560 (-) // 100.0 //
Probeset : 1636208_a_at
Accessions : protein= NP_611377; /// NP_788412;, nucleotide= NM_137533; /// NM_176232;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0034396.
BDGP gene expression has embryonic in situ data for CG15097: 18 pix of staining in 8 body parts.
Homophila reports that CG15097 is a close match (7e-54) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
TRiP has 2 RNAi stocks for FBgn0034396 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034396 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 94 of 4 4.40Up
Head68 34 of 4 2.90Up
Eye123 134 of 4 5.29Up
Thoracicoabdominal ganglion70 34 of 4 3.00Up
Salivary gland12 30 of 4 0.51None
Crop50 14 of 4 2.20Up
Midgut4 10 of 4 0.20Down
Tubule8 00 of 4 0.40Down
Hindgut12 02 of 4 0.50None
Heart52 44 of 4 2.26Up
Fat body5 30 of 4 0.23None
Ovary8 00 of 4 0.30None
Testis31 44 of 4 1.30None
Male accessory glands27 63 of 4 1.20None
Virgin spermatheca13 10 of 4 0.59None
Mated spermatheca6 10 of 4 0.29None
Adult carcass19 21 of 4 0.80None
Larval CNS78 74 of 4 3.37Up
Larval Salivary gland53 84 of 4 2.28Up
Larval midgut14 22 of 4 0.64None
Larval tubule281 414 of 412.00Up
Larval hindgut44 34 of 4 1.90Up
Larval fat body28 11 of 4 1.20None
Larval trachea46 44 of 4 1.97Up
Larval carcass75 234 of 4 3.21None
S2 cells (growing)120 124 of 4 5.17Up
Whole fly23 64 of 4

Looking for CG15097-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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