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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15099-RA through 18771 annotations produced 1 hits



/// (CG15099 /// DmirCG15099):

Annotation Number : CG15099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034400
Gbrowse : chr2R:14724320-14733368 (-) // 100.0 //
Probeset : 1624237_at
Accessions : protein= NP_611381;, nucleotide= NM_137537;
FlyMine data for FBgn0034400.
VDRC has 2 RNAi stocks for FBgn0034400 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain196 ± 64 of 4 1.60Up
Head117 ± 54 of 4 1.00None
Eye159 ± 144 of 4 1.31None
Thoracicoabdominal ganglion206 ± 134 of 4 1.70Up
Salivary gland327 ± 174 of 4 2.69Up
Crop138 ± 54 of 4 1.10None
Midgut262 ± 64 of 4 2.20Up
Tubule161 ± 34 of 4 1.30Up
Hindgut180 ± 64 of 4 1.50Up
Heart250 ± 144 of 4 2.06Up
Fat body112 ± 44 of 4 0.92None
Ovary198 ± 14 of 4 1.60Up
Testis126 ± 84 of 4 1.00None
Male accessory glands161 ± 44 of 4 1.30Up
Virgin spermatheca103 ± 24 of 4 0.85None
Mated spermatheca106 ± 44 of 4 0.88None
Adult carcass136 ± 184 of 4 1.10None
Larval CNS138 ± 74 of 4 1.14None
Larval Salivary gland313 ± 244 of 4 2.58Up
Larval midgut289 ± 224 of 4 2.38Up
Larval tubule241 ± 34 of 4 2.00Up
Larval hindgut198 ± 84 of 4 1.64Up
Larval fat body203 ± 184 of 4 1.70Up
Larval trachea171 ± 274 of 4 1.41Up
Larval carcass147 ± 34 of 4 1.22Up
S2 cells (growing)1077 ± 384 of 4 8.87Up
Whole fly121 ± 84 of 4

Looking for CG15099-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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