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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15101-RA through 18771 annotations produced 1 hits



JH-epoxide hydrolase (Jheh1):

Annotation Number : CG15101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010053
Gbrowse : chr2R:14740926-14742614 (-) // 100.0 //
Probeset : 1626414_at
Accessions : protein= NP_611385;, nucleotide= NM_137541;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004301 // epoxide hydrolase activity // inferr
FlyMine data for FBgn0010053.
BDGP gene expression has embryonic in situ data for Jheh1: 14 pix of staining in 4 body parts.
Homophila reports that CG15101 is a close match (3e-90) to human gene EPHX1 (NP_000111), a gene associated with Diphenylhydantoin toxicity (1);Fetal hydantoin syndrome (1) (?);Hypercholanemia, familial, 607748 (3);{Preeclampsia, susceptibility to}, 189800 (3).
BioGrid reports that CG15101 interacts with CG5144 .
VDRC has 2 RNAi stocks for FBgn0010053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 ± 64 of 4 0.90None
Head605 ± 174 of 4 3.50Up
Eye370 ± 334 of 4 2.11Up
Thoracicoabdominal ganglion197 ± 134 of 4 1.10None
Salivary gland58 ± 44 of 4 0.33Down
Crop857 ± 324 of 4 4.90Up
Midgut984 ± 284 of 4 5.60Up
Tubule822 ± 624 of 4 4.70Up
Hindgut1082 ± 304 of 4 6.20Up
Heart721 ± 114 of 4 4.11Up
Fat body1138 ± 2224 of 4 6.49Up
Ovary50 ± 24 of 4 0.30Down
Testis78 ± 44 of 4 0.40Down
Male accessory glands374 ± 254 of 4 2.10Up
Virgin spermatheca757 ± 214 of 4 4.32Up
Mated spermatheca591 ± 1024 of 4 3.37Up
Adult carcass792 ± 1224 of 4 4.50Up
Larval CNS29 ± 134 of 4 0.17Down
Larval Salivary gland59 ± 44 of 4 0.34Down
Larval midgut533 ± 454 of 4 3.04Up
Larval tubule176 ± 104 of 4 1.00None
Larval hindgut202 ± 134 of 4 1.15None
Larval fat body288 ± 234 of 4 1.60Up
Larval trachea133 ± 74 of 4 0.76None
Larval carcass123 ± 144 of 4 0.71None
S2 cells (growing)169 ± 94 of 4 0.96None
Whole fly175 ± 224 of 4

Looking for CG15101-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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