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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15110-RA through 18771 annotations produced 1 hits



chr2R:15017098-15021223 (+) // 100.0 // (Drosophila Ext-like 3):

Annotation Number : CG15110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636990_at
Accessions : protein= , nucleotide= NP_523790;
Pathway : "0006024 // glycosaminoglycan biosynthetic process // inferred from mutant phenotype /// 0006044 // N-acetylglucosamine
Interpro : polysaccharide chain biosynthetic process // inferred from mutant phenotype /// 0015014 // heparan sulfate proteoglycan
FlyMine data for full length.
Homophila reports that CG15110 is a close match (2e-46) to human gene EXT1 (NP_000118), a gene associated with Chondrosarcoma, 215300 (3);Exostoses, multiple, type 1, 133700 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 34 of 4 1.20Up
Head100 ± 44 of 4 1.10None
Eye46 ± 14 of 4 0.52Down
Thoracicoabdominal ganglion108 ± 44 of 4 1.20Up
Salivary gland57 ± 44 of 4 0.65Down
Crop134 ± 24 of 4 1.50Up
Midgut133 ± 34 of 4 1.50Up
Tubule91 ± 24 of 4 1.00None
Hindgut85 ± 24 of 4 1.00None
Heart102 ± 104 of 4 1.16None
Fat body176 ± 124 of 4 1.99Up
Ovary202 ± 44 of 4 2.30Up
Testis12 ± 04 of 4 0.10Down
Male accessory glands41 ± 44 of 4 0.50Down
Virgin spermatheca165 ± 74 of 4 1.87Up
Mated spermatheca142 ± 114 of 4 1.61Up
Adult carcass103 ± 24 of 4 1.20Up
Larval CNS137 ± 54 of 4 1.55Up
Larval Salivary gland62 ± 24 of 4 0.71Down
Larval midgut90 ± 164 of 4 1.02None
Larval tubule120 ± 24 of 4 1.40Up
Larval hindgut94 ± 104 of 4 1.06None
Larval fat body113 ± 74 of 4 1.30Up
Larval trachea132 ± 154 of 4 1.50Up
Larval carcass81 ± 84 of 4 0.92None
S2 cells (growing)308 ± 54 of 4 3.48Up
Whole fly88 ± 44 of 4

Looking for CG15110-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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