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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15111-RB through 18771 annotations produced 1 hits



(CG15111):

Annotation Number : CG15111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034419
Gbrowse : chr2R:15024881-15028543 (+) // 100.0 //
Probeset : 1625568_a_at
Accessions : protein= NP_611397; /// NP_725856;, nucleotide= NM_137553; /// NM_166328;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0034419.
VDRC has 2 RNAi stocks for FBgn0034419 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain598 ± 104 of 4 2.20Up
Head458 ± 64 of 4 1.70Up
Eye887 ± 154 of 4 3.20Up
Thoracicoabdominal ganglion622 ± 164 of 4 2.20Up
Salivary gland370 ± 194 of 4 1.34Up
Crop197 ± 34 of 4 0.70Down
Midgut452 ± 204 of 4 1.60Up
Tubule212 ± 74 of 4 0.80Down
Hindgut300 ± 44 of 4 1.10None
Heart267 ± 44 of 4 0.97None
Fat body264 ± 284 of 4 0.96None
Ovary233 ± 64 of 4 0.80Down
Testis1072 ± 244 of 4 3.90Up
Male accessory glands479 ± 104 of 4 1.70Up
Virgin spermatheca363 ± 74 of 4 1.31Up
Mated spermatheca364 ± 174 of 4 1.32Up
Adult carcass183 ± 04 of 4 0.70Down
Larval CNS432 ± 154 of 4 1.56Up
Larval Salivary gland320 ± 114 of 4 1.15Up
Larval midgut368 ± 364 of 4 1.33None
Larval tubule295 ± 64 of 4 1.10None
Larval hindgut346 ± 114 of 4 1.25Up
Larval fat body249 ± 434 of 4 0.90None
Larval trachea329 ± 124 of 4 1.19Up
Larval carcass223 ± 134 of 4 0.81Down
S2 cells (growing)447 ± 134 of 4 1.62Up
Whole fly277 ± 114 of 4

Looking for CG15111-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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