Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1512-RA through 18771 annotations produced 1 hits



cul-2 (Cul-2):

Annotation Number : CG1512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032956
Gbrowse : chr2L:21658751-21663218 (+) // 100.0 //
Probeset : 1637515_s_at
Accessions : protein= NP_610117; /// NP_724352;, nucleotide= NM_136273; /// NM_165390;
Pathway : 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity /// 0031461 // cullin-RIN
Interpro : 0031625 // ubiquitin protein ligase binding // inferred from electronic annotation
FlyMine data for FBgn0032956.
BDGP gene expression has embryonic in situ data for cul-2: 4 pix of staining in 1 body parts.
Homophila reports that CG1512 is a close match (5e-63) to human gene CUL4B;MRXHF2;MRXSC;SFM2 (NP_003579), a gene associated with Mental retardation syndrome, X-linked, Cabezas type, 300354 (3);Mental retardation-hypotonic facies syndrome, X-linked, 2, 300639 (3).
BioGrid reports that CG1512 interacts with CG32635 CG3018 CG14534 CG17508 CG1772 CG9193 CG6358 CG32505 CG11525 CG5568 CG5731 CG14317 CG7148 CG8667 CG18273 CG17227 CG2711 CG1120 CG12432 CG33553 CG8823 CG4496 CG6191 CG17964 CG1765 CG6369 CG31116 CG1244 CG6923 CG33275 .
TRiP has 2 RNAi stocks for FBgn0032956 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032956 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 ± 94 of 4 1.30None
Head156 ± 94 of 4 0.70Down
Eye78 ± 74 of 4 0.36Down
Thoracicoabdominal ganglion204 ± 64 of 4 0.90None
Salivary gland121 ± 54 of 4 0.55Down
Crop226 ± 104 of 4 1.00None
Midgut101 ± 34 of 4 0.50Down
Tubule212 ± 64 of 4 1.00None
Hindgut145 ± 44 of 4 0.70Down
Heart113 ± 104 of 4 0.51Down
Fat body239 ± 114 of 4 1.08None
Ovary472 ± 64 of 4 2.10Up
Testis348 ± 54 of 4 1.60Up
Male accessory glands145 ± 84 of 4 0.70Down
Virgin spermatheca183 ± 144 of 4 0.83None
Mated spermatheca210 ± 114 of 4 0.95None
Adult carcass166 ± 94 of 4 0.80Down
Larval CNS315 ± 384 of 4 1.43Up
Larval Salivary gland225 ± 94 of 4 1.02None
Larval midgut86 ± 64 of 4 0.39Down
Larval tubule174 ± 84 of 4 0.80None
Larval hindgut205 ± 64 of 4 0.93None
Larval fat body418 ± 204 of 4 1.90Up
Larval trachea102 ± 74 of 4 0.46Down
Larval carcass239 ± 64 of 4 1.09None
S2 cells (growing)331 ± 114 of 4 1.50Up
Whole fly220 ± 174 of 4

Looking for CG1512-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime